Scale-dependent Phenomena Underpinning Technology Development
Large-scale study of protein structure, function, and expression (proteomics) is instrumental to molecular biomarker discovery. Due to the constantly changing nature of protein expression and state, these profiles are notoriously difficult to study. High-resolution analytical assays such as two-dimensional electrophoresis and mass spectrometry have proven essential to proteomics; nevertheless, these information-rich methods can be slow and labor intensive. With these considerations in mind, our group is developing techniques, implemented via microfluidic technologies, as a means to achieve a rapid, yet still quantitative, assessment of protein expression & state variations in complex samples.
In spite of significant advances in proteomic technology, few new protein biomarkers have emerged from the proteomic discovery pool, progressed though the scrutiny of validation studies, and become incorporated in diagnostic tools. The long-term goal of our work is development of flexible instruments for the rapid validation of putative disease-specific biomarkers in promising diagnostic fluids. An urgent need exists for robust bioanalytical capability that delivers high-throughput validation of putative biomarkers, thus allowing subsequent incorporation of validated markers into diagnostics. To achieve this aim, our group employs nascent microfluidic technologies to seamlessly integrate complex sample preparation, sample handling, and quantitative bioanalytical assays into tools amenable to automation.
Clinical & Point-of-Care Diagnostics
Appropriate, effective biomolecular analysis mechanisms are identified for diagnostic development based upon the physicochemical characteristics of putative, disease-specific biomarkers. Most disease states are complex — diagnosis & monitoring require more than simple binary detection of a small set of proteins. To compound the difficulty in assessing disease state, analytical grade quantitation and specificity are difficult to achieve as part of a disease diagnostic, especially diagnostics employed in near-patient environments. Consequently, our group is exploring the use of electrophoretic microfluidic formats, as such formats have been demonstrated to allow rapid, analytical-grade quantitation of small sample volumes through enhanced resolving power and high-efficiency operation.