Using diffraction data obtained at Berkeley Lab’s Advanced Light Source (ALS) and at the Stanford Synchrotron Radiation Lightsource (SSRL), researchers in Biosciences’ Molecular Biophysics & Integrated Bioimaging (MBIB) division and at UC Berkeley have discovered how CRISPR-associated (Cas) proteins are able to recognize their target locations with such great specificity. X-ray crystallography was used to solve the structures of Cas1 and Cas2—responsible for DNA-snippet capture and integration—as they were bound to synthesized DNA strands designed to mimic different stages of the process. The resulting structures show how the system works in its native context as part of a bacterial immune system, and also inform the development of the CRISPR-Cas system as a general-purpose molecular recording device. Jun-Jie Liu, a joint postdoc in the labs of Jennifer Doudna and Eva Nogales, and Addison Wright, a graduate student in Doudna’s lab, were co-first authors on the paper, published in the journal Science. Read more in this ALS Science Highlight.
Biosciences Researchers Helped Lay Foundation for Nobel-Winning Cryo-EM
Several Berkeley Lab researchers contributed to the foundational work leading to the development of cryo-electron microscopy (cryo-EM), for which Jacques Dubochet, Joachim Frank, and Richard Henderson were awarded the 2017 Nobel Prize in Chemistry. Among those cited in the Scientific Background are Biosciences’ Bob Glaeser, Ken Downing, and Eva Nogales.
A Near-Atomic Resolution Map of a Key DNA Protein Complex
Molecular Biophysics and Integrated Bioimaging (MBIB) Division scientists led by Eva Nogales have resolved the 3-D structure of a critical human cellular protein complex involved in DNA transcription and repair at an unprecedented level of resolution. The complex, called transcription factor IIH (TFIIH), unzips the DNA double helix so that genes can be accessed and read. Malfunctions of the complex are associated with premature aging, cancer propensity, and a variety of other defects. One challenge with solving the structure of TFIIH has been that it exists in such minute amounts that it is difficult to produce and purify in large quantities. Moreover, once obtained, it may not form crystals suitable for X-ray diffraction. The researchers used cryo-electron microscopy (cryo-EM), a technique in which purified samples are flash-frozen at ultra cold temperatures, and which works even on very small quantities. “The fact that we resolved this protein structure from human cells makes this even more relevant to disease research,” said Nogales. Basil Greber, a postdoctoral fellow in Nogales’s lab, was first author on the study published in the journal Nature. Computational research scientist Pavel Afonine and MBIB Division Director Paul Adams also contributed to the project. Read more from the Berkeley Lab News Center.
ASCB Award Essays by Mina Bissell and Eva Nogales Offer Insights in Personal Journeys
In two American Society for Cell Biology (ASCB) award essays published in the society’s journal Molecular Biology of the Cell, Mina Bissell, distinguished scientist in the Biological Systems & Engineering Division, and Eva Nogales, faculty structural biologist in the Molecular Biologist in the Molecular Biophysics & Integrated Bioimaging Division, each candidly describe their inspiring, personal journeys.
Biosciences Staff Honored with Director’s Awards
Several Biosciences Area personnel have been named as recipients of 2016 Berkeley Lab Director’s Awards. Yan Liang (Biological Systems & Engineering), Eva Nogales, and William Jagust (Molecular Biophysics & Integrated Bioimaging, MBIB) were honored with individual awards in Early Career, Scientific Achievement, and Societal Impact, respectively. Jill Fuss and Steven Yannone (MBIB) were the recipients of a team award in Technology Transfer for the launch of their company CinderBio. Jim Bristow (Biosciences Area Office, Trent Northen (Environmental Genomics & Systems Biology & Joint Genome Institute, JGI), and Susannah Tringe (JGI), along with Eoin Brodie and Peter Nico of the Earth and Environmental Sciences Area, were named in a team award in Service.
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