X-ray free-electron lasers (XFELs) came into use in 2010 for protein crystallography, allowing scientists to study fully hydrated specimens at room temperature without radiation damage. Researchers have developed many new experimental and computational techniques to optimize the technology and draw the most accurate picture of proteins from crystals. Now scientists in the Molecular Biophysics and Integrated Bioimaging (MBIB) Division have developed a new program, diffBragg, which can process every pixel collected from an XFEL for a protein structure independently. In a recent IUCrJ paper, the team led by MBIB Senior Scientist Nicholas Sauter proposed a new processing framework for more accurate determination of protein structures.
How to Reduce Greenhouse Gas? Tips from a Methane-Eating Microbe
Scientists have determined the structure of a unique enzyme, produced by a species of methane-eating bacteria, that converts the greenhouse gas into methanol – a highly versatile liquid fuel and industrial product ingredient.
Their new study, published in the Journal of the American Chemical Society, is the first to report the structure of the enzyme, called soluble methane monooxygenase (sMMO), at room temperature in both its reduced and oxidized forms. This detailed structural information will help researchers design efficient catalysts for industrial methane to methanol conversion processes.
Showtime for Photosynthesis
An international team led by researchers in Berkeley Lab’s Molecular Biophysics and Integrated Bioimaging (MBIB) Division has revealed a key step in the molecular mechanism behind the water splitting reaction of photosynthesis. The finding could help inform the design of renewable energy technology.
X-ray Imaging Reveals Insights into a Natural Mosquito-Killing Compound
Many of the chemicals used to deter or eliminate disease-carrying mosquitoes can pollute ecosystems and drive the evolution of even more problematic, insecticide-resistant species – but thankfully, we may have better options soon.
Superfacility Framework Advances Photosynthesis Research
An article published in the Computing Sciences News Center describes how Biosciences researchers are using a superfacility framework of experimental instrumentation with computational and data facilities to unravel the long-standing mystery of how Photosystem (PSII) works. The protein complex plays a crucial role in photosynthesis, making it key to achieving artificial photosynthesis that could produce fuels using sunlight and carbon dioxide. Researchers—led by Vittal Yachandra, Junko Yano, and Jan Kern in Molecular Biophysics and Integrated Bioimaging (MBIB)—recently began using ESnet to enable real-time processing of experimental data collected at the SLAC National Accelerator Laboratory’s Linac Coherent Light Source (LCLS) at NERSC to observe this water-splitting protein in action. Asmit Bhowmick, a postdoctoral researcher in the laboratory of MBIB senior scientist Nicholas Sauter, is quoted in the article.
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