MBIB News

Biosciences researchers will contribute their expertise to two new projects, “Data Analytics at the Exascale for Free Electron Lasers” and “Exascale Solutions for Microbiome Analysis,” funded by DOE to develop cutting-edge research applications for next-generation supercomputers as part of DOE’s Exascale Computing Project (ECP), a component of President Obama’s National Strategic Computing Initiative that intends to maximize the benefits of high-performance computing for U.S. economic competiveness, national security and scientific discovery. ECP announced its first round of funding on September 7 with the selection of 15 application development proposals for full funding and seven proposals for seed funding.

Lawrence Berkeley National Laboratory (Berkeley Lab) and UC Berkeley researchers have uncovered new clues about the roles of subsurface microbes in globally important cycles. Jill Banfield, senior faculty scientist in the Earth & Environmental Systems Area and professor at UC Berkeley, led the research team that studied soil and water samples containing subsurface microbes collected at a Colorado River basin field site. DNA sequencing of these microbes was performed at the Joint Genome Institute (JGI), a DOE Office of Science User Facility.

As reported online October 24 in the journal Nature Communications, the scientists netted genomes from 80 percent of all known bacterial phyla, a remarkable degree of biological diversity at one location. They also discovered 47 new phylum level bacterial groups, naming many of them after influential microbiologists and other scientists, including ten in the Biosciences Area (with the form Candidatus Surnamebacteria). Phyla-level names have been proposed for Molecular Biophysics & Integrated Bioimaging Division’s Cheryl Kerfeld, Krishna Niyogi, and Jennifer Doudna; Environmental Genomics & Systems Biology’s Louise Glass, Kathleen Ryan, Steven Brenner, Mary Wildermuth, and Judy Wall; and the JGI’s John Vogel and Tanja Woyke. The researchers analyzed the metabolic interactions of these and other subsurface microbes to better understand their roles in ecosystem resilience. Read the full story at the Berkeley Lab News Center.

Karen Davies, staff scientist in the Molecular Biophysics & Integrated Bioimaging Division, and Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI), were two of 50 extraordinary scientists under the age of 40 who were selected to participate alongside business and political leaders in the World Economic Forum’s 2016 Annual Meeting of the New Champions, which took place from June 26-28 in Tianjin, China.

To learn more about their experience joining a community of more than 1500 meeting participants from 90 countries, the Biosciences Communications Team asked them to answer a few questions about their participation and to shed some light on what is said to be “a true global experience addressing today’s unprecedented set of intertwined global challenges – economic, political, societal and environmental.”

Several Biosciences Area personnel have been named as recipients of 2016 Berkeley Lab Director’s Awards. Yan Liang (Biological Systems & Engineering), Eva Nogales, and William Jagust (Molecular Biophysics & Integrated Bioimaging, MBIB) were honored with individual awards in Early Career, Scientific Achievement, and Societal Impact, respectively. Jill Fuss and Steven Yannone (MBIB) were the recipients of a team award in Technology Transfer for the launch of their company CinderBio. Jim Bristow (Biosciences Area Office, Trent Northen (Environmental Genomics & Systems Biology & Joint Genome Institute, JGI), and Susannah Tringe (JGI), along with Eoin Brodie and Peter Nico of the Earth and Environmental Sciences Area, were named in a team award in Service.

An all-day workshop highlighting the Berkeley Lab’s capabilities in electron microscopy was held on Tuesday, October 11. Organized by Paul Adams (Biosciences Area), Peter Denes (Advanced Light Source) and Andy Minor (National Center for Electron Microscopy), the workshop highlighted recent advances in imaging a broad range of materials and biological samples at atomic, or near-atomic scales. In addition, it made evident the many opportunities that could come from integrating capabilities across the Laboratory. Paul Adams, Director of the Molecular Biophysics & Integrated Bioimaging Division, noted that the recent revolution in electron microscopy for biosciences has opened up many new avenues of research and exciting synergies with non-biosciences programs at the Lab. Read more in Glenn Roberts’ Science Short on the Berkeley Lab News Center.