The projects of 15 Biosciences Area scientists and engineers received funding through the FY21 Laboratory Directed Research and Development (LDRD) program.
Deciphering the Impact of Non-coding Mutations in the Human Genome
The Mammalian Functional Genomics Laboratory in Biosciences’ Environmental Genomics and Systems Biology (EGSB) Division has developed a higher-throughput transgenic mouse assay to evaluate the disease-causing potential of human variants in enhancers that turn on gene expression during development. The new approach leverages the CRISPR-Cas9 genome editing technology to create transgenic mice that carry an enhancer-reporter construct at a specific “safe harbor” location in the mouse genome. Because the transgenes are integrated in the same location in the genome there are no position effects, so fewer mice are needed to get reproducible results. To demonstrate proof of principle, the researchers used the new method—which they dubbed enSERT (enhancer inSERTion)—to examine nearly a thousand variants of one of the most well-characterized human enhancers that is associated with polydactyly (extra fingers or toes).
Merchant Receives Moore Foundation Investigator Award
Sabeeha Merchant, faculty scientist in the Environmental Genomics and Systems Biology Division, has received an Investigator Award from the Gordon and Betty Moore Foundation. Merchant, who is also Professor of Biochemistry, Biophysics and Structural Biology and of Plant and Microbial Biology at UC Berkeley, will receive five years of unrestricted support to pursue innovative, risky research that has a high potential for significant conceptual and methodological advances in aquatic symbiosis.
Biosciences Area 2020 LDRD Projects
The projects of 14 Biosciences Area scientists and engineers received funding through the FY20 Laboratory Directed Research and Development (LDRD) program. The funded projects span a diverse array of topics and approaches including: developing closed-loop plastics from biogenic feedstocks; reimagining a root system optimized for plant-microbe interactions; and creating computational tools for extracting macromolecular conformational dynamics. Lab-wide, 96 projects were selected from a field of 168 proposals. Biosciences Area efforts account for 18.5 percent of the $23 million allocated.
Banfield Team Studies Huge Bacteria-eating Viruses
Jill Banfield, an Earth and Environmental Sciences Area faculty scientist with a secondary appointment in the Environmental Genomics & Systems Biology Division, co-led a team to discover 351 different huge bacteria-eating phages. One of these is the largest bacteriophage known to date–with a genome that at 735,000 pairs long–is nearly 15 times longer than the average phage.
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