Two scientists in the Area, Greg Hura and Vivek Mutalik, are heading up research projects that are part of the Department of Energy’s Biopreparedness Research Virtual Environment (BRaVE) initiative. Yasuo Yoshikuni, a scientist at the Joint Genome Institute, is part of a third project that is being led by Brookhaven National Laboratory. These projects will leverage bioimaging expertise to develop better therapies and vaccines for viruses, develop a high-throughput platform to rapidly design countermeasures to drug-resistant pathogens, and unlock the molecular basis of plant-pathogen interactions to create resilient bioenergy crops.
Proteins Designed Using Reinforcement Learning Characterized on SIBYLS Beamline
The SIBYLS beamline at the Advanced Light Source was used to characterize proteins dreamt up by a reinforcement learning algorithm. The algorithm, developed by researchers in David Baker’s lab at the University of Washington, is powered by the machine learning strategy behind computer programs capable of defeating top human players at board games like chess and go. The advance could create a pathway to greater control when designing therapeutic proteins, vaccines, and other molecules.
Gemini Beamline Banks First Protein Structure
A protein structure obtained at Beamline 2.0.1 (“Gemini”) at the Advanced Light Source (ALS) has recently been published in the literature and deposited into the Protein Data Bank—two significant firsts for this beamline. The structure helped provide new insights into the molecular mechanisms involved in triggering certain inflammatory diseases. This milestone, which utilized Gemini’s capacity to target crystals smaller than 20 microns, was almost a decade in the making. Simon Morton, now a semi-retired staff scientist at ALS, and Corie Ralston, facility director at the Molecular Foundry and a staff scientist in the Molecular Biophysics and Integrated Bioimaging Division (MBIB), helped bring the microfocus beamline to the Berkeley Center for Structural Biology (BCSB) in 2014. Beamline operations are now led by Marc Allaire, a biophysicist staff scientist in MBIB and head of the BCSB.
Read More in the Berkeley Lab News Center.
AI Technology Designs Novel Functional Enzyme
Molecular Biophysics and Integrated Bioimaging (MBIB) Division faculty scientists James Fraser and James Holton were part of a team that demonstrated that a natural language processing AI can design novel proteins that function as well as naturally occurring ones. This advance could energize the 50-year-old field of protein engineering by speeding the development of new proteins that can be used for almost anything from therapeutics to degrading plastic.
Biosciences Area FY23 LDRD Projects
The projects of 22 Biosciences Area scientists and engineers received funding through the FY23 Laboratory Directed Research and Development (LDRD) program.
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