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Banumathi Sankaran

Biophysicist Research Scientist

Building: 6, Room 2120
Mail Stop: 6R2100
Phone: (510) 486-6511
Fax: (510) 486-5664
BSankaran@lbl.gov


Links

Research Interests

I am in charge of the the Collaborative Crystallography (CC) program at the Advanced Light Source (ALS). The program aids for a fast, reliable and transparent mail-in crystallographic service for the structural biology community. One of the key features of the CC program is that all the service work is peer reviewed by the scientific community via the ALS general users proposal system. The main benefit of having the service work peer reviewed, is that it allows for a prioritization of proposals on the basis of scientific excellence. The nature of the service work we perform differs from project to project, but can involve all steps from data collection all the way up to validation and submission of the structure to the PDB. Recently, we have been trying to expand our service to include crystallization as well. Users that participate in the CC program agree to include the ALS scientist involved as a coauthor on related manuscripts and on the PDB deposition (more than 200 to date). This program yielded 67 CC-related publications with a total citation count of just over 550, illustrating the productivity and relevance of the program.

Over the last two years, I have worked with more then 20 user groups within the United States. The goal of the CC program is to provide further support to the biological and life sciences community, in particular to those researchers who can benefit from structural information but do not have routine access to equipment and expertise needed to go from pure protein (or gene) to 3D structure. We are currently working on proof-of-principle case studies highlighting the strengths of these expanded services and will pursue opportunities to obtain sustained external funding to continue this effort.

Recent Publications

Related News

Researchers Gain Mechanistic Insight into a Viral-factory Protein

A team that included Banumathi Sankaran of the Molecular Biophysics and Integrated Bioimaging Division studied a protein called σNS, an important component of some viral factories. Understanding how this protein works will foster development of therapeutic strategies against viruses that use similar proteins to replicate.

BCSB Confirms Design of Stimulus-responsive, Two-state Proteins

Researchers have leveraged machine learning to create proteins that toggle between two different shapes in response to biological triggers, overcoming a limiting challenge in computational protein design and broadening the potential functionality of designed proteins. Study co-author Banumathi Sankaran, a research scientist in the Molecular Biophysics and Bioimaging Division, used the Advanced Light Source (ALS) beamlines in the Berkeley Center for Structural Biology (BCSB) to validate results with X-ray crystallography data. 

Congratulations to Biosciences Area Director’s Award Recipients

Each year, the Berkeley Lab Director’s Achievement Award program recognizes outstanding contributions by employees to all facets of Lab activities. Several Biosciences Area personnel are among the 2022 honorees.